STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45795.1Transposase, IS605 OrfB family; COG: COG0675 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87. (380 aa)    
Predicted Functional Partners:
EDR45796.1
Hypothetical protein; COG: COG2452 Predicted site-specific integrase-resolvase; Psort location: Cytoplasmic, score: 8.87.
 
    0.945
EDR47675.1
Resolvase, N-terminal domain protein; COG: COG2452 Predicted site-specific integrase-resolvase; Psort location: Cytoplasmic, score: 8.87.
 
    0.772
EDR46609.1
Resolvase, N-terminal domain protein; COG: COG2452 Predicted site-specific integrase-resolvase; Psort location: Cytoplasmic, score: 8.87.
 
    0.761
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.574
EDR45797.1
Peptidase M16 inactive domain protein; KEGG: hdu:HD0187 1.7e-09 ptrA; protease III K01407; COG: COG1026 Predicted Zn-dependent peptidases, insulinase-like; Psort location: Cytoplasmic, score: 8.87.
       0.510
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.459
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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