STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45805.1Hypothetical protein. (482 aa)    
Predicted Functional Partners:
lepB-4
KEGG: spb:M28_Spy0108 1.9e-18 signal peptidase I K03100; Belongs to the peptidase S26 family.
       0.782
EDR45804.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDR45800.1
Pilin isopeptide linkage domain protein; Psort location: CytoplasmicMembrane, score: 9.75.
       0.634
srtB-3
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
       0.623
EDR45802.1
Pilin isopeptide linkage domain protein; KEGG: ava:Ava_4160 0.0017 VCBS K01317.
      
0.615
EDR45806.1
DNA-binding helix-turn-helix protein; COG: COG4636 Uncharacterized protein conserved in cyanobacteria; Psort location: Cytoplasmic, score: 8.87.
       0.429
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.