STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45807.1KEGG: bcz:BCZK5094 1.7e-26 hydrolase, haloacid dehalogenase-like family K01564; COG: COG0561 Predicted hydrolases of the HAD superfamily; Psort location: Cytoplasmic, score: 8.87. (285 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.803
EDR45809.1
PTS system fructose IIA component; KEGG: ljo:LJ0742 3.8e-36 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable mannose specific K02793; COG: COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; Psort location: Cytoplasmic, score: 8.87.
    
  0.658
EDR45808.1
Alpha amylase, catalytic domain protein; KEGG: lmo:lmo0184 1.2e-174 similar to oligo-1,6-glucosidase K01182; COG: COG0366 Glycosidases; Psort location: Cytoplasmic, score: 9.98.
    
  0.586
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.552
EDR45810.1
KEGG: lsl:LSL_1714 4.9e-75 PTS system, mannose-specific IID component K00890; COG: COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; Psort location: CytoplasmicMembrane, score: 10.00.
    
  0.500
EDR45811.1
KEGG: lsl:LSL_1715 3.4e-67 PTS system, mannose-specific IIC component K00890; COG: COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; Psort location: CytoplasmicMembrane, score: 10.00.
    
  0.499
EDR46662.1
Transcriptional regulatory protein, C-terminal domain protein; KEGG: ava:Ava_3369 2.5e-06 two component transcriptional regulator, winged helix family; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
 0.495
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
     
 0.444
EDR45812.1
KEGG: smu:SMU.100 3.5e-42 putative sorbose PTS system, IIB component K02794; COG: COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; Psort location: Cytoplasmic, score: 9.98.
    
  0.439
EDR45806.1
DNA-binding helix-turn-helix protein; COG: COG4636 Uncharacterized protein conserved in cyanobacteria; Psort location: Cytoplasmic, score: 8.87.
       0.403
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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