STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45819.1DNA-binding helix-turn-helix protein; COG: NOG23408 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (257 aa)    
Predicted Functional Partners:
EDR45820.1
Efflux ABC transporter, permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.26.
  
    0.774
EDR45821.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 6.1e-45 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
       0.773
EDR45817.1
Hypothetical protein; KEGG: lsl:LSL_1334 2.5e-25 wecD; acetyltransferase K00680; COG: COG3153 Predicted acetyltransferase; Psort location: Cytoplasmic, score: 8.87.
 
     0.715
EDR45822.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: spj:MGAS2096_Spy1107 2.1e-42 two-component system histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.36.
       0.605
EDR45823.1
Response regulator receiver domain protein; KEGG: ava:Ava_1878 4.8e-29 two component transcriptional regulator, winged helix family K07659; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
       0.605
EDR45818.1
Hypothetical protein.
       0.570
EDR45374.1
Hypothetical protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.482
EDR45827.1
KEGG: cpf:CPF_1991 1.9e-107 protein kinase K08884; COG: COG2815 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score: 9.82.
   
   0.436
EDR46102.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.406
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.