STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45867.1Hypothetical protein; COG: NOG13733 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (170 aa)    
Predicted Functional Partners:
EDR45866.1
Radical SAM protein, TIGR01212 family; KEGG: fnu:FN1142 4.7e-70 oxygen-independent coproporphyrinogen III oxidase; COG: COG1242 Predicted Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
       0.833
EDR45865.1
Malic enzyme, NAD binding domain protein; KEGG: tte:TTE2332 3.2e-126 sfcA; malic enzyme K00027; COG: COG0281 Malic enzyme; Psort location: CytoplasmicMembrane, score: 9.76.
       0.828
EDR48048.1
COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.772
EDR46265.1
DnaD domain protein; COG: COG3935 Putative primosome component and related proteins; Psort location: Cytoplasmic, score: 8.87.
  
     0.768
EDR46263.1
DNA replication protein DnaC; KEGG: spi:MGAS10750_Spy1680 1.2e-15 replicative DNA helicase K01529; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.736
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
     0.620
EDR46602.1
COG: COG4506 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
  
     0.610
EDR47524.1
Hypothetical protein; KEGG: cch:Cag_0556 2.5e-07 hypE; hydrogenase expression/formation protein HypE K04655; COG: COG0309 Hydrogenase maturation factor; Psort location: Cytoplasmic, score: 8.87.
  
     0.562
EDR47057.1
KEGG: lmf:LMOf2365_1848 0.0085 protein kinase, putative K08884.
  
     0.536
EDR46591.1
LysM domain protein; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
  
     0.532
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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