Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR45912.1COG: COG4709 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (233 aa)    
Predicted Functional Partners:
EDR45913.1
Transcriptional regulator, PadR family; COG: COG1695 Predicted transcriptional regulators.
 
     0.950
EDR45911.1
Hypothetical protein; COG: COG3595 Uncharacterized conserved protein.
 
    0.925
EDR48397.1
Transcriptional regulator, PadR family; KEGG: pho:PH1406 0.0014 threonine synthase K01733; COG: COG1695 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.566
EDR45910.1
Hypothetical protein; COG: NOG17864 non supervised orthologous group.
       0.553
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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