Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cadACadmium-exporting ATPase; KEGG: tte:TTE2467 7.6e-134 zntA2; cation transport ATPases; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 10.00. (620 aa)    
Predicted Functional Partners:
EDR45921.1
KEGG: rru:Rru_A1450 2.8e-10 transcriptional regulator, ArsR family; COG: COG0640 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.851
EDR48568.1
Copper-exporting ATPase; KEGG: tde:TDE0008 2.6e-188 copper-translocating P-type ATPase K01533; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
0.748
EDR45753.1
Hypothetical protein; KEGG: tde:TDE0008 0.00018 copper-translocating P-type ATPase K01533.
  
 
 0.721
EDR48149.1
Hypothetical protein; KEGG: rru:Rru_A1450 1.2e-07 transcriptional regulator, ArsR family; COG: COG0640 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.716
EDR45919.1
Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 0.00044 serine/threonine protein kinase with TPR repeats K00908; COG: COG0457 FOG: TPR repeat.
       0.701
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.692
dapF-2
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.440
EDR45915.1
Putative ATP-dependent helicase/nuclease subunit A; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation; this subunit has the helicase and 3' -> 5' nuclease activities; Belongs to the helicase family. AddA subfamily.
       0.434
EDR45916.1
Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.
       0.434
cadA-2
Cadmium-exporting ATPase; KEGG: bce:BC0596 2.3e-167 zinc-transporting ATPase K01534; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
 
    
0.413
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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