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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiKCobalt chelatase (CbiK); KEGG: ctc:CTC00743 2.3e-45 cbiK; anaerobic cobalt chelatase cbiK K02190; COG: COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase. (406 aa)    
Predicted Functional Partners:
EDR48308.1
Putative cobalt-factor II C(20)-methyltransferase; KEGG: fnu:FN0959 7.6e-31 precorrin-2 C20-methyltransferase K03394; COG: COG2243 Precorrin-2 methylase; Psort location: Cytoplasmic, score: 8.87.
 
 0.989
EDR45958.1
Hypothetical protein.
    
0.974
EDR45710.1
CbiG; KEGG: bfs:BF2549 3.2e-30 putative bifunctional CbiF/CbiG cobalamin biosynthesis protein K03396:K02189; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.952
cobM
KEGG: mja:MJ1578 9.8e-70 cbiF; precorrin-4 C11-methyltransferase K03396; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.912
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
 
 0.877
cobA
uroporphyrinogen-III C-methyltransferase; KEGG: cno:NT01CX_0261 1.5e-89 uroporphyrinogen III synthase/methyltransferase K00589; COG: COG1587 Uroporphyrinogen-III synthase; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.877
cobJ
precorrin-3B C(17)-methyltransferase; KEGG: lin:lin1162 4.3e-60 cbiH; similar to precorrin methylase K03395; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.876
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
  
 0.869
cobK
precorrin-6A reductase; KEGG: ctc:CTC00734 4.6e-56 cbiT; precorrin-6B methylase/decarboxylase cbiT/cbiE K03399:K02191; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.866
EDR46352.1
Siroheme synthase domain protein; KEGG: plu:plu0708 1.1e-28 cysG; sirohaem synthase K02302:K02303:K02304; COG: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); Psort location: Cytoplasmic, score: 8.87.
    
 0.818
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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