Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR46018.1Hypothetical protein; COG: NOG16916 non supervised orthologous group. (179 aa)    
Predicted Functional Partners:
EDR46020.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.855
EDR46017.1
ParB-like protein; KEGG: pub:SAR11_0354 2.2e-47 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
  
   0.833
serS
serine--tRNA ligase; KEGG: pfu:PF1204 1.8e-86 seryl-tRNA synthetase K01875; COG: COG0172 Seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 10.00.
  
    0.779
EDR46016.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein; KEGG: cch:Cag_1803 4.2e-69 ATPase, ParA family K03496; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score: 8.87.
  
    0.748
scpA
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.717
mreD
Rod shape-determining protein MreD; COG: NOG16883 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.656
EDR47432.1
Tetratricopeptide repeat protein; COG: COG1729 Uncharacterized protein conserved in bacteria.
  
     0.600
EDR45877.1
Hypothetical protein; COG: NOG21949 non supervised orthologous group.
 
 
   0.559
EDR46172.1
COG: COG4862 Negative regulator of genetic competence, sporulation and motility; Psort location: Cytoplasmic, score: 8.87.
  
     0.557
EDR47116.1
Sporulation protein YtfJ; COG: COG3874 Uncharacterized conserved protein.
  
     0.539
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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