STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46030.1Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 5.4e-21 sensory transduction protein kinase; COG: COG2199 FOG: GGDEF domain. (586 aa)    
Predicted Functional Partners:
EDR46541.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 1.4e-45 sensory transduction protein kinase; COG: COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; Psort location: Cytoplasmic, score: 8.87.
 
 0.915
EDR48218.1
Hypothetical protein; KEGG: abo:ABO_0442 8.9e-07 sensor histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.786
EDR48419.1
HD domain protein; KEGG: ava:Ava_1777 1.5e-43 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; COG: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.751
EDR46098.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.715
EDR46029.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: chu:CHU_3089 1.7e-59 evgS; sensor histidine kinase/response regulator fusion protein; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
0.610
EDR48422.1
Response regulator receiver domain protein; KEGG: bba:Bd3430 2.1e-65 sensory transduction histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.70.
  
    0.600
radC-2
DNA repair protein RadC; KEGG: vfi:VFB02 4.1e-07 traC; DNA primase TraC; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.578
EDR46078.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
  
     0.551
EDR46063.1
Bacterial mobilization protein MobC; Psort location: Cytoplasmic, score: 8.87.
  
     0.529
EDR46094.1
COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
   0.529
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.