STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46042.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (136 aa)    
Predicted Functional Partners:
EDR46043.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.87.
       0.624
EDR46044.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87.
       0.429
EDR46040.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.97.
       0.423
EDR46041.1
MobA/MobL family protein; KEGG: ret:RHE_PA00159 1.6e-16 traAa; conjugal transfer protein A K01144; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; Psort location: Cytoplasmic, score: 8.87.
       0.423
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.