STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46047.1Hypothetical protein; KEGG: wol:WD0969 0.00022 NADH dehydrogenase I, N subunit, putative K00343; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99. (388 aa)    
Predicted Functional Partners:
EDR46048.1
KEGG: noc:Noc_2142 1.7e-35 ABC transporter, ATPase subunit; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
   0.906
EDR46050.1
Sigma-70 region 2; KEGG: reh:H16_A2563 5.8e-17 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score: 8.87; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.816
EDR46049.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.97.
       0.785
EDR46767.1
DNA-binding helix-turn-helix protein; COG: NOG16841 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.655
EDR46438.1
KEGG: noc:Noc_2142 3.4e-35 ABC transporter, ATPase subunit; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   0.565
EDR45645.1
Transporter, major facilitator family protein; KEGG: rpa:RPA4180 0.00088 pntB; nicotinamide nucleotide transhydrogenase, subunit beta K00325; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.556
EDR46046.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.556
EDR45448.1
Hypothetical protein; COG: NOG11890 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.550
EDR47647.1
Hypothetical protein; KEGG: bsu:BG10233 6.5e-18 bpr, bpf; bacillopeptidase F; COG: COG4412 Uncharacterized protein conserved in bacteria; Psort location: Extracellular, score: 9.55.
  
     0.524
EDR48069.1
Hypothetical protein; KEGG: bsu:BG10233 8.2e-15 bpr, bpf; bacillopeptidase F; COG: COG4412 Uncharacterized protein conserved in bacteria; Psort location: Extracellular, score: 9.55.
  
     0.517
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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