STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46070.1DNA-binding helix-turn-helix protein; KEGG: rfr:Rfer_0219 1.6e-05 transcriptional regulator, XRE family with shikimate kinase activity K00891; COG: NOG36343 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (104 aa)    
Predicted Functional Partners:
EDR46071.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.583
EDR46069.1
Hypothetical protein.
       0.509
EDR46072.1
Hypothetical protein; Psort location: Extracellular, score: 9.87.
       0.433
EDR46073.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.433
radC-2
DNA repair protein RadC; KEGG: vfi:VFB02 4.1e-07 traC; DNA primase TraC; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.433
EDR46075.1
Hypothetical protein.
       0.433
EDR46118.1
LPXTG-motif cell wall anchor domain protein; KEGG: efa:EF1519 9.9e-05 cation-transporting ATPase, E1-E2 family; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 10.00.
  
     0.432
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.