STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46092.1Putative phage head-tail adaptor; KEGG: mpe:MYPE6470 1.3e-05 parC; DNA topoisomerase IV subunit A K02621; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 10.00. (1753 aa)    
Predicted Functional Partners:
EDR46094.1
COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.860
EDR46089.1
KEGG: ddi:DDB0167703 0.0090 hypothetical protein K01971; Psort location: Cytoplasmic, score: 8.87.
 
     0.819
EDR46080.1
NlpC/P60 family protein; KEGG: bat:BAS5084 6.5e-18 N-acetylmuramoyl-L-alanine amidase, C-terminus K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.55.
 
   
 0.784
EDR46093.1
Hypothetical protein.
       0.773
EDR46064.1
Relaxase/mobilization nuclease domain protein; KEGG: ctc:CTC00579 0.0013 sbcC; exonuclease sbcC K03546; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
  
     0.770
EDR46078.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
  
     0.770
EDR46076.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.766
EDR46063.1
Bacterial mobilization protein MobC; Psort location: Cytoplasmic, score: 8.87.
  
     0.764
radC-2
DNA repair protein RadC; KEGG: vfi:VFB02 4.1e-07 traC; DNA primase TraC; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.764
EDR46068.1
Hypothetical protein; COG: COG1396 Predicted transcriptional regulators.
  
     0.754
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.