STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46098.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (117 aa)    
Predicted Functional Partners:
EDR46099.1
ImpB/MucB/SamB family protein; KEGG: btl:BALH_p0040 2.4e-59 uvrX; DNA-damage repair protein (DNA polymerase IV) K00961; COG: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; Psort location: Cytoplasmic, score: 8.87.
 
    0.859
EDR46094.1
COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.756
radC-2
DNA repair protein RadC; KEGG: vfi:VFB02 4.1e-07 traC; DNA primase TraC; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.727
EDR46076.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.717
EDR46030.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 5.4e-21 sensory transduction protein kinase; COG: COG2199 FOG: GGDEF domain.
  
     0.715
EDR46078.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
  
     0.701
EDR46089.1
KEGG: ddi:DDB0167703 0.0090 hypothetical protein K01971; Psort location: Cytoplasmic, score: 8.87.
 
     0.677
EDR46097.1
Hypothetical protein.
       0.655
EDR46101.1
Putative toxin-antitoxin system, toxin component; COG: COG2856 Predicted Zn peptidase; Psort location: Cytoplasmic, score: 8.87.
 
     0.654
EDR46080.1
NlpC/P60 family protein; KEGG: bat:BAS5084 6.5e-18 N-acetylmuramoyl-L-alanine amidase, C-terminus K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.55.
  
     0.624
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.