STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46100.1DNA-binding helix-turn-helix protein; KEGG: reh:H16_A1411 0.0096 shikimate kinase containing a XRE-type HTH DNA-binding domain K00924; COG: NOG20170 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (152 aa)    
Predicted Functional Partners:
EDR46101.1
Putative toxin-antitoxin system, toxin component; COG: COG2856 Predicted Zn peptidase; Psort location: Cytoplasmic, score: 8.87.
 
    0.914
EDR46102.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.735
EDR46078.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
  
     0.663
repA
Replication initiator protein A domain protein; COG: NOG34358 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.663
EDR46076.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.646
EDR46092.1
Putative phage head-tail adaptor; KEGG: mpe:MYPE6470 1.3e-05 parC; DNA topoisomerase IV subunit A K02621; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 10.00.
 
     0.638
EDR46094.1
COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.633
EDR46098.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.613
EDR46064.1
Relaxase/mobilization nuclease domain protein; KEGG: ctc:CTC00579 0.0013 sbcC; exonuclease sbcC K03546; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
  
    0.576
EDR46068.1
Hypothetical protein; COG: COG1396 Predicted transcriptional regulators.
  
     0.572
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.