STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46148.1DNA binding domain, excisionase family. (86 aa)    
Predicted Functional Partners:
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.915
EDR46149.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
   
 0.904
EDR46147.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.762
EDR48138.1
Hypothetical protein; KEGG: mge:MG_010 3.1e-05 DNA primase K02316.
 
   
 0.525
EDR45454.1
Hypothetical protein; KEGG: pfo:Pfl_0538 5.3e-05 DnaB helicase K02314; COG: NOG14428 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.505
EDR45422.1
Hypothetical protein.
  
     0.492
EDR47619.1
Hypothetical protein; COG: NOG12663 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.474
EDR46828.1
DNA-binding helix-turn-helix protein; COG: NOG21982 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.453
EDR46377.1
DNA-binding helix-turn-helix protein; COG: NOG21982 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.449
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
     
 0.447
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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