STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46152.1Cation diffusion facilitator family transporter; KEGG: mth:MTH1893 9.0e-10 zinC; cation efflux system protein (zinc/cadmium) K01529; COG: COG3965 Predicted Co/Zn/Cd cation transporters; Psort location: CytoplasmicMembrane, score: 9.97. (307 aa)    
Predicted Functional Partners:
EDR46150.1
Hypothetical protein.
       0.615
EDR46151.1
Hypothetical protein.
       0.572
EDR46153.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: cac:CAC1267 2.2e-47 dacB; D-alanyl-D-alanine carboxypeptidase K01286; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.500
EDR46102.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.441
EDR46770.1
Addiction module toxin, RelE/StbE family; Psort location: Cytoplasmic, score: 8.87.
  
     0.407
EDR46667.1
Toxin-antitoxin system, toxin component, HicA family; Psort location: Cytoplasmic, score: 8.87.
  
     0.405
EDR48092.1
Phage minor capsid protein; COG: NOG25118 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.404
EDR46154.1
Hpt domain protein; KEGG: syn:slr2098 5.2e-06 hik21; two-component hybrid histidine kinase K07678; Psort location: Cytoplasmic, score: 8.87.
       0.401
EDR46830.1
Replication initiation factor; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
  
     0.400
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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