Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDR46159.1Peptidase, M23 family; KEGG: ban:BA2345 9.3e-05 penicillin-binding protein 1A K05366; COG: COG0739 Membrane proteins related to metalloendopeptidases. (301 aa)    
Predicted Functional Partners:
EDR48526.1
Hypothetical protein; COG: NOG17862 non supervised orthologous group.
  
    0.689
EDR46591.1
LysM domain protein; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.680
EDR47784.1
Hypothetical protein.
  
     0.673
EDR46287.1
Spore coat protein, CotS family; COG: NOG09979 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.641
EDR47520.1
Hypothetical protein; KEGG: ddi:DDB0167703 9.0e-05 hypothetical protein K01971; COG: NOG12748 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
 
   0.636
EDR47537.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.618
EDR46590.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.612
EDR47258.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.600
EDR47020.1
Putative sporulation protein YqfD; COG: NOG07866 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.592
EDR48523.1
Putative stage III sporulation protein AE; COG: NOG06161 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.584
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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