STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46160.1GIY-YIG catalytic domain protein; KEGG: mca:MCA0838 3.0e-06 type I restriction-modification system, R subunit K01153; COG: COG2827 Predicted endonuclease containing a URI domain. (86 aa)    
Predicted Functional Partners:
EDR46159.1
Peptidase, M23 family; KEGG: ban:BA2345 9.3e-05 penicillin-binding protein 1A K05366; COG: COG0739 Membrane proteins related to metalloendopeptidases.
       0.586
EDR46210.1
Methyltransferase domain protein; KEGG: ctc:CTC00225 1.7e-51 methyltransferase K00599; COG: COG4123 Predicted O-methyltransferase; Psort location: Cytoplasmic, score: 8.87; Belongs to the methyltransferase superfamily.
  
  
 0.549
EDR46161.1
COG: COG1272 Predicted membrane protein, hemolysin III homolog; Psort location: CytoplasmicMembrane, score: 9.99.
       0.522
EDR46162.1
Hypothetical protein.
       0.428
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.427
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.