STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46175.1N-acetylmuramoyl-L-alanine amidase; KEGG: ctc:CTC02570 3.1e-34 germination-specific N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase. (246 aa)    
Predicted Functional Partners:
EDR47573.1
KEGG: bsu:BG10825 9.7e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
  
0.933
EDR46833.1
KEGG: bce:BC4687 2.2e-40 N-acetylmuramoyl-L-alanine amidase K01446; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.822
EDR47652.1
KEGG: bca:BCE_2849 5.0e-34 N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
     
 0.746
EDR46176.1
Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.647
EDR46174.1
Glycosyl hydrolase, family 18; KEGG: ctc:CTC01180 3.4e-15 spore peptidoglycan hydrolase (N-acetylglucosaminidase) K06306; COG: COG3858 Predicted glycosyl hydrolase.
       0.638
EDR46711.1
KEGG: ljo:LJ1840 0.0020 cell wall-associated serine proteinase K01361; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.25.
   
 
  0.553
EDR45757.1
Hypothetical protein; KEGG: ddi:DDB0191487 6.7e-06 kinX; LISK family protein kinase K05743; COG: NOG35986 non supervised orthologous group.
   
 
  0.553
EDR47651.1
COG: COG4824 Phage-related holin (Lysis protein); Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.535
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.533
EDR48078.1
Hypothetical protein; KEGG: ret:RHE_PF00265 7.2e-05 probable two-component sensor histidine kinase/response regulator hybrid protein; COG: COG5412 Phage-related protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.524
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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