Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDR46183.1Type II/IV secretion system protein; KEGG: reh:H16_A0983 6.0e-86 cpaF3; flp pilus assembly ATPase CpaF K01529; COG: COG4962 Flp pilus assembly protein, ATPase CpaF; Psort location: Cytoplasmic, score: 8.87. (403 aa)    
Predicted Functional Partners:
EDR46184.1
Bacterial type II secretion system domain protein F; COG: COG4965 Flp pilus assembly protein TadB; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.998
EDR46185.1
Bacterial type II secretion system domain protein F; COG: COG2064 Flp pilus assembly protein TadC; Psort location: CytoplasmicMembrane, score: 9.75.
 
 
 0.997
EDR46182.1
Hypothetical protein; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score: 8.87.
 
     0.837
EDR46187.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.689
EDR46186.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.660
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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