STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46184.1Bacterial type II secretion system domain protein F; COG: COG4965 Flp pilus assembly protein TadB; Psort location: Cytoplasmic, score: 8.87. (230 aa)    
Predicted Functional Partners:
EDR46183.1
Type II/IV secretion system protein; KEGG: reh:H16_A0983 6.0e-86 cpaF3; flp pilus assembly ATPase CpaF K01529; COG: COG4962 Flp pilus assembly protein, ATPase CpaF; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.982
EDR46185.1
Bacterial type II secretion system domain protein F; COG: COG2064 Flp pilus assembly protein TadC; Psort location: CytoplasmicMembrane, score: 9.75.
     0.958
EDR46182.1
Hypothetical protein; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score: 8.87.
 
     0.911
EDR46187.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.845
EDR46186.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.807
EDR46191.1
Hypothetical protein; COG: COG1716 FOG: FHA domain; Psort location: Cytoplasmic, score: 8.87.
 
     0.548
EDR46541.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 1.4e-45 sensory transduction protein kinase; COG: COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; Psort location: Cytoplasmic, score: 8.87.
  
    0.537
EDR46174.1
Glycosyl hydrolase, family 18; KEGG: ctc:CTC01180 3.4e-15 spore peptidoglycan hydrolase (N-acetylglucosaminidase) K06306; COG: COG3858 Predicted glycosyl hydrolase.
  
     0.425
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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