STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46193.1Peptidase, S54 family; KEGG: eci:UTI89_C0653 3.5e-23 hypothetical protein; COG: COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); Psort location: CytoplasmicMembrane, score: 9.99. (199 aa)    
Predicted Functional Partners:
EDR48257.1
SPFH/Band 7/PHB domain protein; KEGG: reh:H16_A2036 2.1e-51 membrane protease subunits, stomatin/prohibitin homologs K01423; COG: COG0330 Membrane protease subunits, stomatin/prohibitin homologs; Psort location: Cytoplasmic, score: 8.87.
   
 0.935
EDR46833.1
KEGG: bce:BC4687 2.2e-40 N-acetylmuramoyl-L-alanine amidase K01446; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
  
   0.892
EDR46191.1
Hypothetical protein; COG: COG1716 FOG: FHA domain; Psort location: Cytoplasmic, score: 8.87.
 
     0.635
EDR46192.1
Hypothetical protein.
       0.608
EDR47026.1
KEGG: pca:Pcar_2351 2.4e-27 5-formyltetrahydrofolate cyclo-ligase family protein K01934; COG: COG0212 5-formyltetrahydrofolate cyclo-ligase; Psort location: Cytoplasmic, score: 8.87.
  
    0.557
EDR46190.1
Hypothetical protein.
       0.557
EDR46189.1
Hypothetical protein; KEGG: pma:Pro0860 5.6e-05 pulO; prepilin peptidase K02236; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.499
EDR47573.1
KEGG: bsu:BG10825 9.7e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
  
   0.490
EDR47652.1
KEGG: bca:BCE_2849 5.0e-34 N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
  
   0.489
EDR47879.1
N-acetylmuramoyl-L-alanine amidase; KEGG: spn:SP_0965 1.9e-44 endo-beta-N-acetylglucosaminidase K01227; COG: COG5263 FOG: Glucan-binding domain (YG repeat); Psort location: Extracellular, score: 8.10.
  
   0.478
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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