STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46217.1COG: COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats. (648 aa)    
Predicted Functional Partners:
EDR46216.1
Sigma-70 region 2; KEGG: btl:BALH_3229 7.4e-17 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score: 8.87.
 
     0.876
EDR46215.1
Hypothetical protein.
       0.773
EDR46218.1
Tetratricopeptide repeat protein; KEGG: mpe:MYPE6470 3.3e-58 parC; DNA topoisomerase IV subunit A K02621; COG: KOG1181 FOG: Low-complexity; Psort location: Extracellular, score: 7.62.
 
     0.650
EDR47209.1
Hypothetical protein.
  
     0.604
EDR47518.1
Hypothetical protein; KEGG: rno:309804 1.3e-25 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208; COG: COG1340 Uncharacterized archaeal coiled-coil protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.595
EDR47802.1
Hypothetical protein.
  
     0.540
EDR46214.1
Aconitase domain protein; KEGG: ecp:ECP_0784 6.2e-242 aconitate hydratase K01680; COG: COG1048 Aconitase A; Psort location: Cytoplasmic, score: 9.98.
       0.470
EDR45948.1
Hypothetical protein; KEGG: cac:CAC0404 2.2e-09 serine/threonine protein kinase fused to TPR repeats domain K08884; COG: COG0515 Serine/threonine protein kinase; Psort location: Cytoplasmic, score: 8.87.
  
     0.467
EDR47024.1
Hypothetical protein.
  
     0.423
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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