STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46255.1Amidohydrolase; KEGG: eco:b1337 3.0e-59 abgB; predicted peptidase, aminobenzoyl-glutamate utilization protein K01436; COG: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; Belongs to the peptidase M20A family. (442 aa)    
Predicted Functional Partners:
EDR46254.1
C4-dicarboxylate anaerobic carrier; KEGG: lwe:lwe0030 0.0039 PTS system, beta-glucoside-specific, IIABC component K00890; COG: COG1288 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
    0.581
EDR46277.1
Hypothetical protein; COG: NOG30389 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
      0.528
EDR46253.1
Amidohydrolase; KEGG: fnu:FN1186 3.4e-67 amidohydrolase K01463; COG: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase M20A family.
 
    
0.460
EDR46256.1
Polysaccharide deacetylase; KEGG: ctc:CTC00537 1.8e-29 peptidoglycan N-acetylglucosamine deacetylase K01463; COG: COG0726 Predicted xylanase/chitin deacetylase.
       0.449
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.