STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46273.1Methyltransferase, MtaA/CmuA family; KEGG: swo:Swol_0417 9.7e-63 uroporphyrinogen decarboxylase K01599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score: 8.87. (353 aa)    
Predicted Functional Partners:
EDR45723.1
2Fe-2S iron-sulfur cluster binding domain protein; KEGG: son:SO0907 2.0e-10 nqrF-1; NADH:ubiquinone oxidoreductase, Na translocating, beta subunit K00351; Psort location: Cytoplasmic, score: 8.87.
 
    0.800
EDR45725.1
B12 binding domain protein; KEGG: mbu:Mbur_1365 1.1e-43 corrinoid methyltransferase K00548; Psort location: Cytoplasmic, score: 8.87.
 
    0.797
EDR45722.1
Hypothetical protein; KEGG: mmp:MMP0831 5.5e-21 mtbA; uroporphyrinogen decarboxylase (URO-D) K00599; Psort location: Cytoplasmic, score: 8.87.
  
     0.774
EDR45734.1
Hypothetical protein; KEGG: swo:Swol_0417 3.0e-15 uroporphyrinogen decarboxylase K01599; Psort location: Cytoplasmic, score: 8.87.
  
     0.774
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
 
 0.696
cobA
uroporphyrinogen-III C-methyltransferase; KEGG: cno:NT01CX_0261 1.5e-89 uroporphyrinogen III synthase/methyltransferase K00589; COG: COG1587 Uroporphyrinogen-III synthase; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.696
EDR46272.1
Methyltransferase, MtaA/CmuA family; KEGG: swo:Swol_0417 1.1e-59 uroporphyrinogen decarboxylase K01599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score: 8.87.
 
   
0.595
EDR46274.1
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 9.8e-06 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.536
EDR46277.1
Hypothetical protein; COG: NOG30389 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.511
EDR46275.1
ABC transporter, permease protein; KEGG: hpa:HPAG1_0451 7.2e-07 molybdenum ABC transporter ModB K06022; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.446
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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