STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46291.1Spore cortex protein YabQ (Spore_YabQ); Psort location: CytoplasmicMembrane, score: 9.26. (103 aa)    
Predicted Functional Partners:
yabP
Sporulation protein YabP; COG: NOG13819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.934
EDR46292.1
Septum formation initiator; Psort location: Cytoplasmic, score: 8.87.
 
    0.857
EDR46289.1
S4 domain protein; KEGG: bba:Bd3791 0.00031 rluD; pseudouridylate synthase K06180; COG: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
  
    0.782
EDR46287.1
Spore coat protein, CotS family; COG: NOG09979 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.768
EDR47098.1
Hypothetical protein.
  
     0.750
EDR48008.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.705
EDR46186.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.700
EDR47791.1
KEGG: gka:GK1126 3.2e-10 spoIIGA; protease (sporulation sigma-E factor processing peptidase); COG: NOG09744 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.697
EDR46310.1
LysM domain protein; KEGG: lsl:LSL_0304 0.00017 phage lysin K01185; COG: COG1652 Uncharacterized protein containing LysM domain.
  
     0.687
EDR46203.1
Hypothetical protein; COG: KOG3704 Heparan sulfate D-glucosaminyl 3-O-sulfotransferase; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.679
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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