STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46324.1AP endonuclease, family 2; KEGG: ret:RHE_PF00383 5.3e-07 putative epimerase protein K01820; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score: 8.87. (257 aa)    
Predicted Functional Partners:
EDR46325.1
Oxidoreductase, NAD-binding domain protein; KEGG: rba:RB7494 6.7e-09 probable NADH-dependent dyhydrogenase related protein; COG: COG0673 Predicted dehydrogenases and related proteins; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.901
EDR46326.1
KEGG: bca:BCE_5014 8.9e-21 hydrolase, alpha/beta fold family K08680; COG: COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Psort location: Cytoplasmic, score: 9.36.
 
    0.636
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.503
EDR46323.1
Hypothetical protein.
  
    0.489
EDR46327.1
Transporter, auxin efflux carrier (AEC) family protein; KEGG: azo:azo2534 4.3e-17 mdcF2; putative malonate transporter; COG: COG0679 Predicted permeases; Psort location: CytoplasmicMembrane, score: 9.99.
       0.436
EDR46319.1
ABC transporter, permease protein; KEGG: lwe:lwe0999 2.5e-05 gbuB; glycine betaine/L-proline ABC transporter, permease protein; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.415
EDR47284.1
Kinase, PfkB family; KEGG: btl:BALH_0607 2.3e-22 rbsK; ribokinase K00852; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.408
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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