STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46415.1Transporter, major facilitator family protein; KEGG: dre:30298 2.2e-07 jak2b; Janus kinase 2b K04447; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00. (416 aa)    
Predicted Functional Partners:
EDR46416.1
Amidohydrolase; KEGG: hso:HS_1434 2.5e-64 amaA; possible N-acyl-L-amino acid amidohydrolase K01436; COG: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; Psort location: Cytoplasmic, score: 8.87.
  
    0.781
EDR46417.1
Hypothetical protein; COG: NOG14070 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.756
EDR47931.1
Prephenate dehydratase; KEGG: det:DET0461 3.5e-49 tyrA; chorismate mutase / prephenate dehydratase K04093:K04518; COG: COG0077 Prephenate dehydratase; Psort location: Cytoplasmic, score: 9.98.
   
 
 0.490
EDR46956.1
FAD dependent oxidoreductase; KEGG: mlo:mlr1283 5.5e-28 sarcosine dehydrogenase K00314; COG: COG0665 Glycine/D-amino acid oxidases (deaminating); Psort location: Cytoplasmic, score: 8.87.
  
     0.432
EDR45645.1
Transporter, major facilitator family protein; KEGG: rpa:RPA4180 0.00088 pntB; nicotinamide nucleotide transhydrogenase, subunit beta K00325; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.430
sotB
COG: COG2814 Arabinose efflux permease; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.430
EDR45715.1
RDD family protein; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.428
EDR47362.1
Molybdopterin oxidoreductase; KEGG: msu:MS0732 3.0e-203 uncharacterized anaerobic dehydrogenase K00123; COG: COG3383 Uncharacterized anaerobic dehydrogenase; Psort location: Cytoplasmic, score: 8.87; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.417
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.