STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46423.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (138 aa)    
Predicted Functional Partners:
pcrA
KEGG: efa:EF0721 4.4e-186 pcrA; ATP-dependent DNA helicase PcrA K03657; COG: COG0210 Superfamily I DNA and RNA helicases; Psort location: Cytoplasmic, score: 8.87.
       0.780
EDR46425.1
Hypothetical protein.
 
     0.588
EDR46719.1
DNA-binding helix-turn-helix protein; KEGG: afu:AF2118 0.0047 guaB-2; IMP dehydrogenase K00088; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.560
EDR46419.1
Hypothetical protein.
       0.507
EDR46420.1
Hypothetical protein.
       0.507
EDR46421.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: lin:lin2827 2.5e-53 similar to the two components sensor protein kdpD K07646; COG: COG2205 Osmosensitive K+ channel histidine kinase; Psort location: CytoplasmicMembrane, score: 9.99.
       0.507
EDR46422.1
Response regulator receiver domain protein; KEGG: eci:UTI89_C0698 1.8e-45 kdpE; transcriptional regulatory protein KdpE K07667; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
       0.507
EDR46427.1
Hypothetical protein; COG: COG1432 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.469
EDR46714.1
Transglycosylase SLT domain protein; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
     0.464
EDR46690.1
Hypothetical protein; KEGG: sab:SAB1265c 1.1e-11 probable nitric oxide reductase protein K00377; COG: COG4548 Nitric oxide reductase activation protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.458
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.