STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46425.1Hypothetical protein. (80 aa)    
Predicted Functional Partners:
EDR46426.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.773
EDR46427.1
Hypothetical protein; COG: COG1432 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDR48378.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.745
EDR47838.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.722
rumA-2
23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: ctc:CTC01941 4.5e-120 tRNA (uracil-5-) -methyltransferase K00557; COG: COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Psort location: Cytoplasmic, score: 8.87; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.707
EDR47586.1
Hypothetical protein.
  
     0.693
EDR47117.1
Hypothetical protein; KEGG: mma:MM1325 1.2e-05 cheA; chemotaxis protein K03407; COG: KOG1181 FOG: Low-complexity.
  
     0.688
EDR47799.1
Hypothetical protein.
  
     0.673
EDR46311.1
Hypothetical protein.
  
     0.671
EDR46292.1
Septum formation initiator; Psort location: Cytoplasmic, score: 8.87.
  
     0.656
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.