STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46469.1Transcriptional regulator, AraC family; KEGG: bce:BC3740 6.1e-10 ADA regulatory protein K00567; COG: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; Psort location: Cytoplasmic, score: 8.87. (320 aa)    
Predicted Functional Partners:
EDR46468.1
KEGG: rru:Rru_A0864 7.8e-77 ABC transporter, transmembrane region K06020; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.862
EDR46467.1
KEGG: rru:Rru_A0863 2.2e-79 ABC transporter, transmembrane region K06020; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.861
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.832
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.757
EDR46460.1
Ser/Thr phosphatase family protein; COG: COG2129 Predicted phosphoesterases, related to the Icc protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.733
EDR46484.1
Cna protein B-type domain protein; KEGG: ddi:DDB0191487 0.00014 kinX; LISK family protein kinase K05743; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.26.
 
     0.698
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.677
EDR48620.1
Transcriptional regulator, AraC family; KEGG: bce:BC3740 8.0e-11 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.65.
 
 
 0.628
EDR46472.1
Hypothetical protein; KEGG: sha:SH0168 3.0e-06 lip; putative triacylglycerol lipase precursor; K01046 triacylglycerol lipase K01046; COG: NOG05967 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.625
EDR46470.1
Hypothetical protein; COG: NOG08579 non supervised orthologous group.
 
     0.575
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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