EDR45391.1 protein (Dorea formicigenerans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDR45391.1

Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (99 aa)

Predicted Functional Partners:

EDR45392.1

0.793

EDR45395.1

0.783

EDR45413.1

0.777

EDR45412.1

0.773

EDR45411.1

0.771

EDR45389.1

0.770

EDR45469.1

0.770

EDR45466.1

0.768

EDR45381.1

0.744

EDR45465.1

0.741

Your Current Organism:

Dorea formicigenerans

NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDR45381.1	EDR45389.1	DORFOR_03165	DORFOR_03173	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	0.717
EDR45381.1	EDR45391.1	DORFOR_03165	DORFOR_03175	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.	0.744
EDR45381.1	EDR45395.1	DORFOR_03165	DORFOR_03179	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.692
EDR45381.1	EDR45411.1	DORFOR_03165	DORFOR_03195	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.695
EDR45381.1	EDR45412.1	DORFOR_03165	DORFOR_03196	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	CHC2 zinc finger domain protein; KEGG: dde:Dde_2053 1.7e-10 DNA primase K02316; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	0.701
EDR45381.1	EDR45413.1	DORFOR_03165	DORFOR_03197	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein.	0.640
EDR45381.1	EDR45465.1	DORFOR_03165	DORFOR_03249	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein.	0.606
EDR45381.1	EDR45466.1	DORFOR_03165	DORFOR_03250	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.596
EDR45381.1	EDR45469.1	DORFOR_03165	DORFOR_03253	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein.	0.593
EDR45389.1	EDR45381.1	DORFOR_03173	DORFOR_03165	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	0.717
EDR45389.1	EDR45391.1	DORFOR_03173	DORFOR_03175	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.	0.770
EDR45389.1	EDR45395.1	DORFOR_03173	DORFOR_03179	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.754
EDR45389.1	EDR45411.1	DORFOR_03173	DORFOR_03195	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.766
EDR45389.1	EDR45412.1	DORFOR_03173	DORFOR_03196	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	CHC2 zinc finger domain protein; KEGG: dde:Dde_2053 1.7e-10 DNA primase K02316; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	0.768
EDR45389.1	EDR45413.1	DORFOR_03173	DORFOR_03197	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein.	0.759
EDR45389.1	EDR45465.1	DORFOR_03173	DORFOR_03249	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein.	0.772
EDR45389.1	EDR45466.1	DORFOR_03173	DORFOR_03250	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.730
EDR45389.1	EDR45469.1	DORFOR_03173	DORFOR_03253	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein.	0.741
EDR45391.1	EDR45381.1	DORFOR_03175	DORFOR_03165	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.	RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.	0.744
EDR45391.1	EDR45389.1	DORFOR_03175	DORFOR_03173	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.	Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.	0.770