STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45403.1Hypothetical protein; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (343 aa)    
Predicted Functional Partners:
EDR45401.1
Plasmid recombination enzyme; COG: NOG17369 non supervised orthologous group.
 
     0.861
EDR45405.1
RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.
 
     0.845
EDR45400.1
ParB-like protein; KEGG: pub:SAR11_0354 4.0e-10 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87; Belongs to the ParB family.
 
     0.839
tnpX-2
COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
 
     0.816
EDR45406.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.804
EDR45404.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
 
     0.761
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
  
 0.746
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
  
 0.731
EDR45409.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.728
EDR45399.1
COG: COG4443 Uncharacterized protein conserved in bacteria.
 
     0.698
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.