STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45404.1Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87. (157 aa)    
Predicted Functional Partners:
EDR45405.1
RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.
 
     0.889
EDR45401.1
Plasmid recombination enzyme; COG: NOG17369 non supervised orthologous group.
 
    0.785
EDR45403.1
Hypothetical protein; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.765
tnpX-2
COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
 
     0.720
EDR45400.1
ParB-like protein; KEGG: pub:SAR11_0354 4.0e-10 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87; Belongs to the ParB family.
 
     0.692
EDR45406.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
 
     0.666
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.655
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.652
EDR45409.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.635
EDR46110.1
Hypothetical protein.
  
     0.634
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.