STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45409.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (124 aa)    
Predicted Functional Partners:
EDR45406.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
 
     0.804
EDR45405.1
RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.
 
    0.800
EDR45410.1
SNF2 family N-terminal domain protein; KEGG: chu:CHU_1468 5.2e-11 dpn; possible adenine-specific DNA methylase K00599; COG: COG4646 DNA methylase; Psort location: Extracellular, score: 7.50.
       0.787
EDR45401.1
Plasmid recombination enzyme; COG: NOG17369 non supervised orthologous group.
 
     0.751
EDR45408.1
KEGG: ana:all4338 2.2e-65 fus; translation elongation factor EF-G K02355; COG: COG0480 Translation elongation factors (GTPases); Psort location: Cytoplasmic, score: 9.98.
 
     0.751
tnpX-2
COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
 
     0.744
EDR45403.1
Hypothetical protein; COG: NOG19743 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.728
EDR45411.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.678
EDR45412.1
CHC2 zinc finger domain protein; KEGG: dde:Dde_2053 1.7e-10 DNA primase K02316; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.678
EDR45413.1
Hypothetical protein.
       0.678
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.