STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45426.1DNA topoisomerase; KEGG: efa:EF2312 2.7e-145 topB-2; DNA topoisomerase III K03169; COG: COG0550 Topoisomerase IA; Psort location: Cytoplasmic, score: 8.87. (494 aa)    
Predicted Functional Partners:
EDR45414.1
Hypothetical protein; KEGG: efa:EF2312 9.1e-51 topB-2; DNA topoisomerase III K03169; COG: COG0550 Topoisomerase IA; Psort location: Cytoplasmic, score: 8.87.
     0.978
EDR45655.1
Topoisomerase DNA-binding C4 zinc finger domain protein; KEGG: pab:PAB1430 5.2e-06 topA; DNA topoisomerase I K03168; COG: COG0514 Superfamily II DNA helicase; Psort location: Cytoplasmic, score: 8.87.
   
 0.971
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
   0.908
EDR45424.1
Hypothetical protein; KEGG: mag:amb4223 0.0019 GTP cyclohydrolase I K01495.
       0.773
EDR45425.1
Resolvase, N-terminal domain protein; KEGG: pfa:PF10_0362 0.0098 DNA polymerase zeta catalytic subunit, putative K00961; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
       0.773
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 0.661
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.649
EDR45427.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
 
     0.618
EDR45422.1
Hypothetical protein.
       0.586
EDR45423.1
Hypothetical protein.
       0.586
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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