STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpX-3COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87. (556 aa)    
Predicted Functional Partners:
EDR45436.1
Hypothetical protein.
 
     0.944
EDR45440.1
MobA/MobL family protein; KEGG: ret:RHE_PA00159 8.8e-29 traAa; conjugal transfer protein A K01144; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; Psort location: Cytoplasmic, score: 8.87.
 
     0.847
EDR45437.1
Virulence-associated protein E; COG: COG5545 Predicted P-loop ATPase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
     0.805
EDR45445.1
Hypothetical protein.
 
     0.767
EDR45447.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.763
EDR45444.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.752
EDR45438.1
CHC2 zinc finger domain protein; KEGG: dvu:DVU1789 2.2e-15 dnaG; DNA primase K02316; COG: COG0358 DNA primase (bacterial type); Psort location: Cytoplasmic, score: 8.87.
     0.727
EDR45449.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.684
EDR45450.1
Hypothetical protein; COG: COG3655 Predicted transcriptional regulator.
  
     0.681
EDR45446.1
Hypothetical protein.
 
     0.624
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.