STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45463.1Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: rha:RHA1_ro10191 4.3e-44 RNA-directed DNA polymerase K00986; COG: COG3344 Retron-type reverse transcriptase; Psort location: Cytoplasmic, score: 8.87. (636 aa)    
Predicted Functional Partners:
EDR45457.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; KEGG: smu:SMU.1178c 9.4e-33 putative amino acid ABC transporter, ATP-binding protein K02028; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
       0.705
EDR45458.1
COG: COG4652 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score: 9.99.
       0.705
EDR45459.1
Hypothetical protein.
       0.705
EDR45460.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.705
EDR45461.1
Resolvase, N-terminal domain protein; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
       0.705
EDR45462.1
Hypothetical protein.
       0.705
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.