STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45468.1Hypothetical protein. (63 aa)    
Predicted Functional Partners:
EDR45469.1
Hypothetical protein.
       0.730
EDR45470.1
ParB-like protein; KEGG: pub:SAR11_0354 2.2e-09 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87; Belongs to the ParB family.
       0.696
EDR45472.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein; KEGG: rru:Rru_A3627 1.8e-45 cobyrinic acid a,c-diamide synthase K03496; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score: 8.87.
       0.691
EDR45466.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.605
EDR45467.1
Hypothetical protein; COG: NOG34358 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.593
EDR45471.1
Hypothetical protein.
       0.515
EDR45465.1
Hypothetical protein.
       0.439
EDR45464.1
TraG family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
       0.410
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.