STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45489.12-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 3.4e-60 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score: 8.87. (432 aa)    
Predicted Functional Partners:
EDR48408.1
Putative CoA-substrate-specific enzyme activase; KEGG: eci:UTI89_C5044 5.7e-42 yjiL; hypothetical protein YjiL K04111; COG: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); Psort location: Cytoplasmic, score: 8.87.
 
 0.946
EDR45490.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.928
EDR46948.1
Putative CoA-substrate-specific enzyme activase; KEGG: eci:UTI89_C5044 4.7e-19 yjiL; hypothetical protein YjiL K04111; COG: COG3580 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.731
EDR45488.1
CobW/P47K family protein; KEGG: reh:H16_A0195 2.5e-39 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.
  
    0.473
yedF
Selenium metabolism protein YedF; COG: NOG13230 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87; Belongs to the sulfur carrier protein TusA family.
 
    0.465
EDR45487.1
Putative TIGR03943 family protein; COG: COG3689 Predicted membrane protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.431
EDR48396.1
Hypothetical protein; COG: NOG13230 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87; Belongs to the sulfur carrier protein TusA family.
 
    0.410
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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