EDR45490.1 protein (Dorea formicigenerans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDR45490.1

Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (92 aa)

Predicted Functional Partners:

EDR45489.1

0.928

EDR45488.1

0.458

EDR46745.1

0.455

EDR45487.1

0.415

EDR47066.1

0.407

Your Current Organism:

Dorea formicigenerans

NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDR45487.1	EDR45488.1	DORFOR_03271	DORFOR_03272	Putative TIGR03943 family protein; COG: COG3689 Predicted membrane protein; Psort location: Cytoplasmic, score: 8.87.	CobW/P47K family protein; KEGG: reh:H16_A0195 2.5e-39 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.	0.795
EDR45487.1	EDR45489.1	DORFOR_03271	DORFOR_03273	Putative TIGR03943 family protein; COG: COG3689 Predicted membrane protein; Psort location: Cytoplasmic, score: 8.87.	2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 3.4e-60 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score: 8.87.	0.431
EDR45487.1	EDR45490.1	DORFOR_03271	DORFOR_03274	Putative TIGR03943 family protein; COG: COG3689 Predicted membrane protein; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.415
EDR45488.1	EDR45487.1	DORFOR_03272	DORFOR_03271	CobW/P47K family protein; KEGG: reh:H16_A0195 2.5e-39 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.	Putative TIGR03943 family protein; COG: COG3689 Predicted membrane protein; Psort location: Cytoplasmic, score: 8.87.	0.795
EDR45488.1	EDR45489.1	DORFOR_03272	DORFOR_03273	CobW/P47K family protein; KEGG: reh:H16_A0195 2.5e-39 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.	2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 3.4e-60 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score: 8.87.	0.473
EDR45488.1	EDR45490.1	DORFOR_03272	DORFOR_03274	CobW/P47K family protein; KEGG: reh:H16_A0195 2.5e-39 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.458
EDR45489.1	EDR45487.1	DORFOR_03273	DORFOR_03271	2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 3.4e-60 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score: 8.87.	Putative TIGR03943 family protein; COG: COG3689 Predicted membrane protein; Psort location: Cytoplasmic, score: 8.87.	0.431
EDR45489.1	EDR45488.1	DORFOR_03273	DORFOR_03272	2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 3.4e-60 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score: 8.87.	CobW/P47K family protein; KEGG: reh:H16_A0195 2.5e-39 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.	0.473
EDR45489.1	EDR45490.1	DORFOR_03273	DORFOR_03274	2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 3.4e-60 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.928
EDR45490.1	EDR45487.1	DORFOR_03274	DORFOR_03271	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	Putative TIGR03943 family protein; COG: COG3689 Predicted membrane protein; Psort location: Cytoplasmic, score: 8.87.	0.415
EDR45490.1	EDR45488.1	DORFOR_03274	DORFOR_03272	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	CobW/P47K family protein; KEGG: reh:H16_A0195 2.5e-39 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.	0.458
EDR45490.1	EDR45489.1	DORFOR_03274	DORFOR_03273	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 3.4e-60 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score: 8.87.	0.928
EDR45490.1	EDR46745.1	DORFOR_03274	DORFOR_01968	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; KEGG: cal:orf19.2684 1.2e-06 SLK192; conserved coiled-coil protein K00870; COG: KOG4809 Rab6 GTPase-interacting protein involved in endosome-to-TGN transport; Psort location: Cytoplasmic, score: 8.87.	0.455
EDR45490.1	EDR47066.1	DORFOR_03274	DORFOR_01557	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.407
EDR46745.1	EDR45490.1	DORFOR_01968	DORFOR_03274	Hypothetical protein; KEGG: cal:orf19.2684 1.2e-06 SLK192; conserved coiled-coil protein K00870; COG: KOG4809 Rab6 GTPase-interacting protein involved in endosome-to-TGN transport; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.455
EDR47066.1	EDR45490.1	DORFOR_01557	DORFOR_03274	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.	0.407