STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45514.1Hypothetical protein; COG: COG1943 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87. (209 aa)    
Predicted Functional Partners:
EDR45515.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.0028 dam; adenine-specific DNA methyltransferase K06223; Psort location: Cytoplasmic, score: 8.87.
       0.668
EDR45513.1
Toxin-antitoxin system, toxin component, RelE family; COG: COG4679 Phage-related protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.555
EDR47931.1
Prephenate dehydratase; KEGG: det:DET0461 3.5e-49 tyrA; chorismate mutase / prephenate dehydratase K04093:K04518; COG: COG0077 Prephenate dehydratase; Psort location: Cytoplasmic, score: 9.98.
    
  0.528
EDR45512.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.00014 dam; adenine-specific DNA methyltransferase K06223; COG: NOG17530 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.493
EDR45516.1
Hypothetical protein; KEGG: fnu:FN0522 5.4e-08 exonuclease SBCC K03546; COG: COG5022 Myosin heavy chain; Psort location: Cytoplasmic, score: 8.87.
       0.442
EDR47165.1
Bacterial peptidase A24, N-terminal domain protein; KEGG: ppd:Ppro_0982 1.4e-36 prepilin peptidase; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.439
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.