STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45530.1Polysaccharide biosynthesis protein; KEGG: rty:RT0526 0.00010 nuoN; NADH dehydrogenase (ubiquinone) subunit N K00343; COG: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; Psort location: CytoplasmicMembrane, score: 9.99. (426 aa)    
Predicted Functional Partners:
EDR47852.1
KEGG: tcx:Tcr_1675 1.1e-72 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.895
EDR45540.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: mta:Moth_0669 5.8e-49 undecaprenyl-phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.885
EDR45533.1
Hypothetical protein; KEGG: sdy:SDY_4054 5.0e-06 waaL; lipid A-core:surface polymer ligase WaaL K02847; COG: COG3307 Lipid A core - O-antigen ligase and related enzymes; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.872
EDR45525.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 9.7e-63 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.869
EDR45531.1
Bacterial transferase hexapeptide repeat protein; KEGG: spy:SPy1065 6.3e-20 putative acetyltransferase K00680; COG: COG0110 Acetyltransferase (isoleucine patch superfamily); Psort location: Cytoplasmic, score: 9.98.
 
  
 0.856
EDR45532.1
Glycosyltransferase, group 1 family protein; KEGG: mma:MM1946 2.8e-13 glycosyltransferase K00754; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.842
EDR45534.1
Glycosyltransferase, group 1 family protein; KEGG: ava:Ava_1041 4.7e-38 glycosyl transferase, group 1 K00703; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.842
EDR45536.1
Hypothetical protein; COG: NOG21681 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.834
EDR45529.1
Polysaccharide biosynthesis protein; KEGG: saa:SAUSA300_0156 1.0e-106 cap5E; capsular polysaccharide biosynthesis protein Cap5E K01726; COG: COG1086 Predicted nucleoside-diphosphate sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.815
EDR45539.1
Glycosyltransferase, group 2 family protein; KEGG: hit:NTHI2002 7.6e-47 lsgF; putative UDP-galactose--lipooligosaccharide galactosyltransferase; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.808
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.