STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45544.1Hypothetical protein; KEGG: bsu:BG10954 2.2e-06 ponA; penicillin-binding proteins 1a/1b (PBP1) (penicillin-insensitive transglycosylase / penicillin-sensitive transpeptidase) K05366; COG: COG1196 Chromosome segregation ATPases. (104 aa)    
Predicted Functional Partners:
EDR45545.1
Capsular exopolysaccharide family; KEGG: bsu:BG12508 3.8e-36 ywqD; similar to capsular polysaccharide biosynthesis protein K00903; COG: COG0489 ATPases involved in chromosome partitioning; Psort location: CytoplasmicMembrane, score: 9.82.
       0.714
EDR45546.1
Chain length determinant protein; KEGG: rha:RHA1_ro05453 4.7e-12 probable protein-tyrosine kinase K08252; COG: COG3944 Capsular polysaccharide biosynthesis protein; Psort location: Cytoplasmic, score: 8.87.
       0.714
EDR45543.1
Cell envelope-like function transcriptional attenuator common domain protein; COG: COG1316 Transcriptional regulator.
       0.566
srtB-4
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
       0.465
EDR45541.1
LPXTG-motif cell wall anchor domain protein; Psort location: Cellwall, score: 9.98.
       0.429
EDR45547.1
PHP domain protein; KEGG: bcl:ABC3814 7.9e-29 capsular polysaccharide biosynthesis protein K01104; COG: COG4464 Capsular polysaccharide biosynthesis protein; Psort location: Cytoplasmic, score: 8.87.
       0.426
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.