STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45547.1PHP domain protein; KEGG: bcl:ABC3814 7.9e-29 capsular polysaccharide biosynthesis protein K01104; COG: COG4464 Capsular polysaccharide biosynthesis protein; Psort location: Cytoplasmic, score: 8.87. (246 aa)    
Predicted Functional Partners:
EDR45546.1
Chain length determinant protein; KEGG: rha:RHA1_ro05453 4.7e-12 probable protein-tyrosine kinase K08252; COG: COG3944 Capsular polysaccharide biosynthesis protein; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.964
EDR45545.1
Capsular exopolysaccharide family; KEGG: bsu:BG12508 3.8e-36 ywqD; similar to capsular polysaccharide biosynthesis protein K00903; COG: COG0489 ATPases involved in chromosome partitioning; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.948
EDR48166.1
KEGG: bha:BH2238 1.4e-24 protein-tyrosine-phosphatase K01104; COG: COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
 0.866
EDR45540.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: mta:Moth_0669 5.8e-49 undecaprenyl-phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.624
EDR47852.1
KEGG: tcx:Tcr_1675 1.1e-72 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.596
EDR45543.1
Cell envelope-like function transcriptional attenuator common domain protein; COG: COG1316 Transcriptional regulator.
 
  
 0.537
EDR45525.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 9.7e-63 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.529
EDR45529.1
Polysaccharide biosynthesis protein; KEGG: saa:SAUSA300_0156 1.0e-106 cap5E; capsular polysaccharide biosynthesis protein Cap5E K01726; COG: COG1086 Predicted nucleoside-diphosphate sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.475
EDR45548.1
Site-specific recombinase, phage integrase family; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
       0.448
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
    
   0.447
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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