STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45549.1DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.87. (68 aa)    
Predicted Functional Partners:
EDR45548.1
Site-specific recombinase, phage integrase family; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
   
 0.896
EDR45550.1
DNA-binding helix-turn-helix protein; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
 
    0.863
EDR48342.1
Hypothetical protein; COG: COG4974 Site-specific recombinase XerD; Psort location: Extracellular, score: 8.82.
 
   
 0.774
EDR48164.1
Transposase; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.774
EDR48165.1
Transposase; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
   
 0.767
EDR45552.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.00033 dam; adenine-specific DNA methyltransferase K06223; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score: 8.87.
 
     0.608
EDR46465.1
DNA-binding helix-turn-helix protein; COG: NOG37851 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.589
EDR46874.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group.
  
     0.539
EDR46462.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group.
  
     0.507
EDR46145.1
Sigma-70, region 4; KEGG: btl:BALH_3229 3.7e-06 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.502
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.