STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR45554.1Leucine Rich Repeat protein; KEGG: btk:BT9727_2348 1.4e-27 npr; bacillolysin (neutral protease) K01400; COG: COG4886 Leucine-rich repeat (LRR) protein; Psort location: Cellwall, score: 9.93. (703 aa)    
Predicted Functional Partners:
EDR45553.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.737
EDR48390.1
Putative phage head-tail adaptor; KEGG: cpf:CPF_2369 4.4e-67 subtilase family protein; COG: COG1404 Subtilisin-like serine proteases.
 
   0.438
EDR46846.1
Peptidase, S8/S53 family; KEGG: cpf:CPF_2369 2.9e-54 subtilase family protein; COG: COG1404 Subtilisin-like serine proteases; Psort location: Cytoplasmic, score: 8.87.
 
   0.419
EDR45552.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.00033 dam; adenine-specific DNA methyltransferase K06223; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score: 8.87.
       0.403
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.