STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM52608.1Hypothetical protein; KEGG: sgl:SG0645 0.28 S-adenosylmeTHIonine:tRNA ribosyltransferase-isomerase K07568; COG: COG3501 Uncharacterized protein conserved in bacteria. (118 aa)    
Predicted Functional Partners:
EDM52609.1
Hypothetical protein; KEGG: cne:CNB03230 0.994 sphingosine hydroxylase K04713.
       0.773
EDM52607.1
F5/8 type C domain protein; KEGG: cpe:CPE1364 1.5e-14 beta-N-acetylhexosaminidase K01207; COG: COG0823 Periplasmic component of the Tol biopolymer transport system.
       0.564
lepB
Signal peptidase I; KEGG: spm:spyM18_0127 1.2e-25 lepA; signal peptidase I K03100; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase S26 family.
       0.476
Your Current Organism:
Eubacterium ventriosum
NCBI taxonomy Id: 411463
Other names: E. ventriosum ATCC 27560, Eubacterium ventriosum ATCC 27560
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.